From:	CORA Institutional Repository
Sent:	05 September 2017 13:07
To:	'danscma@yahoo.com'
Subject:	E-thesis

Dear Daniel,

We archived your E-thesis in CORA today.
It can be viewed on this link: https://cora.ucc.ie/handle/10468/4632

We converted your Word document to pdf & we made some changes (outlined below).

We included Chapters 3 & 7 but inserted a citation for Chapter 4 as the published version 
cannot be included.


Changes Made:
*	Accepted all changes and stopped tracking 
*	Got rid of line numbering
*	Chapter 3 published version can be included. Downloaded Chapter 3
*	Chapter 4 published version cannot be included but needed to insert citation 
Schmidt-Martin, D., Crosbie, O., Kenny-Walsh, E. and Fanning, L. J. (2015) 'Intensive temporal 
mapping of hepatitis C hypervariable region 1 quasispecies provides novel insights into hepatitis 
C virus evolution in chronic infection', Journal of General Virology, 96(8), pp. 2145-2156. DOI: 
http://dx.doi.org/10.1099/vir.0.000149

*	Chapter 7 published version can be included based on 
http://journals.asm.org/site/misc/ASM_Author_Statement.xhtml Downloaded Chapter 
7
SM authors also retain the right to reuse the full article in his/her dissertation or thesis. “Proper 
credit” means either the copyright lines shown on the top of the first page of the PDF version, 
or “Copyright © American Society for Microbiology, [insert journal name, volume number, year, 
page numbers and DOI]” of the HTML version.

Palmer, B. A., Schmidt-Martin, D., Dimitrova, Z., Skums, P., Crosbie, O., Kenny-Walsh, E. and 
Fanning, L. J. (2016) 'Network Analysis of the Chronic Hepatitis C Virome Defines Hypervariable 
Region 1 Evolutionary Phenotypes in the Context of Humoral Immune Responses', Journal of 
Virology, 90(7), pp. 3318-3329. DOI: http://dx.doi.org/10.1128/JVI.02995-15 



Please let us know if you have any questions.



Best Regards,

Gillian


Gillian Cotter |Institutional Repository |Boole Library, University College Cork, Ireland 
+ 353 (0) 21 420 2284 |g.cotter@ucc.ie , cora@ucc.ie | Cork Open Research Archive http://cora.ucc.ie/ 

 University College Cork is named The Sunday Times University of the Year 2016 and 2017: www.ucc.ie/en/