Dairy-Met: compositional metagenomic analysis of milk and cheeses

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dc.contributor.advisor Cotter, Paul D. en
dc.contributor.advisor O'Sullivan, Orla en
dc.contributor.advisor Fitzgerald, Gerald F. en
dc.contributor.author Quigley, Lisa
dc.date.accessioned 2014-02-24T14:41:13Z
dc.date.issued 2013
dc.date.submitted 2013
dc.identifier.citation Quigley, L. 2013. Dairy-Met: Compositional metagenomic analysis of milk and cheeses. PhD Thesis, University College Cork. en
dc.identifier.endpage 303 en
dc.identifier.uri http://hdl.handle.net/10468/1406
dc.description.abstract Unpasteurised milk and many cheeses contain a diverse microbiological population. These microorganisms play important roles in dairy foods and can, for example, contribute to the development of flavours and aromas, determine safety, cause spoilage or enhance the health of the consumer. It is thus important to understand thoroughly the microorganisms present in these food types. Traditional culture dependent and culture-independent methods have provided much detail regarding the microbial content of dairy foods. However, the development of next-generation DNA sequencing technologies has revolutionised our knowledge of complex microbial environments. Throughout this thesis we observe the benefits of applying these technologies to provide a detailed understanding of the bacterial content of dairy foods, including those present in milk pre- and post-pasteurisation, Irish farmhouse cheeses and commercially produced cheeses which encounter a discolouration defect, as well as to study genomic changes in microbes associated with dairy foods. Through the application of these state-of-the-art technologies we identified the presence of microorganisms not previously associated with dairy foods. en
dc.description.sponsorship Teagasc (Walsh Fellowship Scheme) en
dc.format.mimetype application/pdf en
dc.language.iso en en
dc.publisher University College Cork en
dc.rights © 2013, Lisa Quigley. en
dc.rights.uri http://creativecommons.org/licenses/by-nc-nd/3.0/ en
dc.subject Dairy en
dc.subject Milk en
dc.subject Cheese en
dc.subject DNA sequencing en
dc.subject.lcsh Microbial genomics en
dc.subject.lcsh Cheese--Microbiology en
dc.subject.lcsh Milk--Microbiology en
dc.title Dairy-Met: compositional metagenomic analysis of milk and cheeses en
dc.type Doctoral thesis en
dc.type.qualificationlevel Doctoral Degree (Structured) en
dc.type.qualificationname PhD (Food Science and Technology) en
dc.internal.availability Full text available en
dc.description.version Accepted Version
dc.contributor.funder Teagasc en
dc.description.status Not peer reviewed en
dc.internal.school Microbiology en
dc.internal.school Teagasc en
dc.check.reason This thesis is due for publication or the author is actively seeking to publish this material en
dc.check.opt-out No en
dc.thesis.opt-out false
dc.check.entireThesis Entire Thesis Restricted
dc.check.embargoformat Both hard copy thesis and e-thesis en
ucc.workflow.supervisor g.fitzgerald@ucc.ie

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© 2013, Lisa Quigley. Except where otherwise noted, this item's license is described as © 2013, Lisa Quigley.
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