Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

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dc.contributor.author Macqueen, Daniel J.
dc.contributor.author Primmer, Craig R.
dc.contributor.author Houston, Ross D.
dc.contributor.author Nowak, Barbara F.
dc.contributor.author Bernatchez, Louis
dc.contributor.author Bergseth, Steinar
dc.contributor.author Davidson, William S.
dc.contributor.author Gallardo-Escarate, Cristian
dc.contributor.author Goldammer, Tom
dc.contributor.author Guiguen, Yann
dc.contributor.author Iturra, Patricia
dc.contributor.author Kijas, James W.
dc.contributor.author Koop, Ben F.
dc.contributor.author Lien, Sigbjorn
dc.contributor.author Maass, Alejandro
dc.contributor.author Martin, Samuel A. M.
dc.contributor.author McGinnity, Philip
dc.contributor.author Montecino, Martin
dc.contributor.author Naish, Kerry A.
dc.contributor.author Nichols, Krista M.
dc.contributor.author Olafsson, Kristinn
dc.contributor.author Omholt, Stig W.
dc.contributor.author Palti, Yniv
dc.contributor.author Plastow, Graham S.
dc.contributor.author Rexroad, Caird E., III
dc.contributor.author Rise, Matthew L.
dc.contributor.author Ritchie, Rachael J.
dc.contributor.author Sandve, Simen R.
dc.contributor.author Schulte, Patricia M.
dc.contributor.author Tello, Alfredo
dc.contributor.author Vidal, Rodrigo
dc.contributor.author Vik, Jon Olav
dc.contributor.author Wargelius, Anna
dc.contributor.author Yanez, Jose Manuel
dc.date.accessioned 2017-09-26T11:39:19Z
dc.date.available 2017-09-26T11:39:19Z
dc.date.issued 2017
dc.identifier.citation Macqueen, D. J., Primmer, C. R., Houston, R. D., Nowak, B. F., Bernatchez, L., Bergseth, S., Davidson, W. S., Gallardo-Escárate, C., Goldammer, T., Guiguen, Y., Iturra, P., Kijas, J. W., Koop, B. F., Lien, S., Maass, A., Martin, S. A. M., McGinnity, P., Montecino, M., Naish, K. A., Nichols, K. M., Ólafsson, K., Omholt, S. W., Palti, Y., Plastow, G. S., Rexroad, C. E., Rise, M. L., Ritchie, R. J., Sandve, S. R., Schulte, P. M., Tello, A., Vidal, R., Vik, J. O., Wargelius, A. and Yáñez, J. M. (2017) 'Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture', BMC Genomics, 18, 484 (9pp). doi: 10.1186/s12864-017-3862-8 en
dc.identifier.volume 18
dc.identifier.issn 1471-2164
dc.identifier.uri http://hdl.handle.net/10468/4789
dc.identifier.doi 10.1186/s12864-017-3862-8
dc.description.abstract We describe an emerging initiative - the 'Functional Annotation of All Salmonid Genomes' (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance. en
dc.description.sponsorship Biotechnology and Biological Sciences Research Council (BB/P02582X/1) en
dc.format.mimetype application/pdf en
dc.language.iso en en
dc.publisher Biomed Central Ltd en
dc.relation.uri https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3862-8
dc.rights © 2017, the Author(s). Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. en
dc.rights.uri https://creativecommons.org/publicdomain/zero/1.0/
dc.subject Salmonid fish en
dc.subject Genome biology en
dc.subject Functional annotation en
dc.subject Comparative biology en
dc.subject Standardized data and metadata en
dc.subject Data sharing en
dc.subject Aquaculture en
dc.subject Whole genome duplication en
dc.subject Evolution en
dc.subject Phenotyping en
dc.subject Atlantic salmon en
dc.subject Rainbow trout en
dc.subject Oncorhynchus tshawytscha en
dc.subject DNA methylation en
dc.subject ChIP-seq en
dc.subject Salar en
dc.subject Evolution en
dc.subject Insights en
dc.subject Populations en
dc.subject Resistance en
dc.title Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture en
dc.type Article (peer-reviewed) en
dc.internal.authorcontactother Philip Mcginnity, Biological, Earth & Environmental Sciences, University College Cork, Cork, Ireland. +353-21-490-3000 Email: p.mcginnity@ucc.ie en
dc.internal.availability Full text available en
dc.description.version Published Version en
dc.internal.rssid 428512927
dc.internal.wokid WOS:000405443700001
dc.contributor.funder U.S. Department of Agriculture
dc.contributor.funder International Collaboration to Sequence the Atlantic Salmon Genome
dc.contributor.funder Biotechnology and Biological Sciences Research Council
dc.contributor.funder Innova Chile Committee
dc.contributor.funder Corporación de Fomento de la Producción
dc.contributor.funder Genome British Columbia
dc.contributor.funder Norwegian Seafood Research
dc.contributor.funder Norges Forskningsråd
dc.description.status Peer reviewed en
dc.identifier.journaltitle BMC Genomics en
dc.internal.IRISemailaddress p.mcginnity@ucc.ie en
dc.identifier.articleid 484


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© 2017, the Author(s). Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Except where otherwise noted, this item's license is described as © 2017, the Author(s). Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
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