Darned in 2013: inclusion of model organisms and linking with Wikipedia

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dc.contributor.author Kiran, Anmol M.
dc.contributor.author O'Mahony, John J.
dc.contributor.author Sanjeev, Komal
dc.contributor.author Baranov, Pavel V.
dc.date.accessioned 2017-11-14T13:24:30Z
dc.date.available 2017-11-14T13:24:30Z
dc.date.issued 2013
dc.identifier.citation Kiran, A. M., O'Mahony, J. J., Sanjeev, K. and Baranov, P. V. (2013) 'Darned in 2013: inclusion of model organisms and linking with Wikipedia', Nucleic Acids Research, 41(D1), pp. 258-261. doi: 10.1093/nar/gks961 en
dc.identifier.volume 41
dc.identifier.issued D1
dc.identifier.startpage 258
dc.identifier.endpage 261
dc.identifier.issn 0305-1048
dc.identifier.uri http://hdl.handle.net/10468/5021
dc.identifier.doi 10.1093/nar/gks961
dc.description.abstract DARNED (DAtabase of RNA EDiting, available at http://darned.ucc.ie) is a centralized repository of reference genome coordinates corresponding to RNA nucleotides having altered templated identities in the process of RNA editing. The data in DARNED are derived from published datasets of RNA editing events. RNA editing instances have been identified with various methods, such as bioinformatics screenings, deep sequencing and/or biochemical techniques. Here we report our current progress in the development and expansion of the DARNED. In addition to novel database features the DARNED update describes inclusion of Drosophila melanogaster and Mus musculus RNA editing events and the launch of a community-based annotation in the RNA WikiProject. en
dc.description.sponsorship Science Foundation Ireland (06/IN.1/B81); Wellcome Trust (094423) en
dc.format.mimetype application/pdf en
dc.language.iso en en
dc.publisher Oxford University Press en
dc.relation.uri https://academic.oup.com/nar/article/41/D1/D258/1074741/Darned-in-2013-inclusion-of-model-organisms-and
dc.rights © 2012, the Authors. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. en
dc.rights.uri https://creativecommons.org/licenses/by-nc/3.0/
dc.subject DNA-sequence differences en
dc.subject RNA editing sites en
dc.subject To-inosine RNA en
dc.subject Human transcriptome en
dc.subject Widespread RNA en
dc.subject Accurate identification en
dc.subject ADAR deaminases en
dc.subject Messenger RNA en
dc.subject Parallel DNA en
dc.subject Database en
dc.title Darned in 2013: inclusion of model organisms and linking with Wikipedia en
dc.type Article (peer-reviewed) en
dc.internal.authorcontactother Pavel V. Baranov, Biochemistry & Cell Biology, University College Cork, Cork, Ireland. +353-21-490-3000 Email: P.Baranov@ucc.ie en
dc.internal.availability Full text available en
dc.description.version Published Version en
dc.contributor.funder Wellcome Trust
dc.contributor.funder Science Foundation Ireland
dc.description.status Peer reviewed en
dc.identifier.journaltitle Nucleic Acids Research en
dc.internal.IRISemailaddress p.baranov@ucc.ie en
dc.relation.project info:eu-repo/grantAgreement/SFI/SFI Principal Investigator Programme (PI)/06/IN.1/B81/IE/RNA editing in humans: Identification prediction and therapeutic application/


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© 2012, the Authors. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Except where otherwise noted, this item's license is described as © 2012, the Authors. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
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