Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov

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dc.contributor.author Lugli, Gabriele A.
dc.contributor.author Mangifesta, Marta
dc.contributor.author Duranti, Sabrina
dc.contributor.author Anzalone, Rosaria
dc.contributor.author Milani, Christian
dc.contributor.author Mancabelli, Leonardo
dc.contributor.author Alessandri, Giulia
dc.contributor.author Turroni, Francesca
dc.contributor.author Ossiprandi, Maria Cristina
dc.contributor.author van Sinderen, Douwe
dc.contributor.author Ventura, Marco
dc.date.accessioned 2018-02-09T15:24:13Z
dc.date.available 2018-02-09T15:24:13Z
dc.date.issued 2018
dc.identifier.citation Lugli, G. A., Mangifesta, M., Duranti, S., Anzalone, R., Milani, C., Mancabelli, L., Alessandri, G., Turroni, F., Ossiprandi, M. C., v Sinderen, D. and Ventura, M. 'Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov', Systematic and Applied Microbiology, In Press, doi: 10.1016/j.syapm.2018.01.002 en
dc.identifier.startpage 1 en
dc.identifier.endpage 31 en
dc.identifier.issn 0723-2020
dc.identifier.uri http://hdl.handle.net/10468/5436
dc.identifier.doi 10.1016/j.syapm.2018.01.002
dc.description.abstract Six Bifidobacterium strains, i.e., Goo31D, Ham19E, Rab10A, Tam1G, Uis4E and Uis1B, were isolated from domestic goose (Anser domesticus), European hamster (Cricetus cricetus), European rabbit (Oryctolagus cuniculus), emperor tamarin (Saguinus imperator) and pygmy marmoset (Callithrix pygmaea), respectively. Cells are Gram-positive, non-motile, non-sporulating, facultative anaerobic and fructose 6-phosphate phosphoketolase-positive. Phylogenetic analyses based on 16S rRNA and ITS sequences, multilocus sequences (including hsp60, rpoB, dnaJ, dnaG and clpC genes) and the core genome revealed that bifidobacterial strains Goo31D, Ham19E, Rab10A, Tam1G, Uis4E and Uis1B exhibit close phylogenetic relatedness to Bifidobacterium choerinum LMG 10510, Bifidobacterium hapali DSM 100202, Bifidobacterium saguini DSM 23967 and Bifidobacterium stellenboschense DSM 23968. Further genotyping based on the genome sequence of the isolated strains combined with phenotypic analyses, clearly show that these strains are distinct from each of the type strains of the so far recognized Bifidobacterium species. Thus, Bifidobacterium anseris sp. nov. (Goo31D = LMG 30189T = CCUG 70960T), Bifidobacterium criceti sp. nov. (Ham19E = LMG 30188T = CCUG 70962T), Bifidobacterium imperatoris sp. nov. (Tam1G = LMG 30297T = CCUG 70961T), Bifidobacterium italicum sp. nov. (Rab10A = LMG 30187T = CCUG 70963T), Bifidobacterium margollesii sp. nov. (Uis1B = LMG 30296T = CCUG 70959T) and Bifidobacterium parmae sp. nov. (Uis4E = LMG 30295T = CCUG 70964T) are proposed as novel Bifidobacterium species. en
dc.description.sponsorship GenProbio srl, Italy (financial support of the Laboratory of Probiogenomics) en
dc.format.mimetype application/pdf en
dc.language.iso en en
dc.publisher Elsevier en
dc.relation.uri https://www.sciencedirect.com/science/article/pii/S0723202018300171
dc.rights © 2017 Elsevier Ltd. All rights reserved. This manuscript version is made available under the CC BY-NC-ND 4.0 license. en
dc.rights.uri http://creativecommons.org/licenses/by-nc-nd/4.0/ en
dc.subject Phylogenetic en
dc.subject Next generation sequencing en
dc.subject Genomics en
dc.subject Metagenomics en
dc.subject Bifidobacteria en
dc.subject Bifidobacterium en
dc.title Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov en
dc.type Article (peer-reviewed) en
dc.internal.authorcontactother Douwe Van Sinderen, Microbiology, University College Cork, Cork, Ireland. +353-21-490-3000 Email: d.vansinderen@ucc.ie en
dc.internal.availability Full text available en
dc.date.updated 2018-02-09T14:36:27Z
dc.description.version Accepted Version en
dc.internal.rssid 425097209
dc.contributor.funder Science Foundation Ireland en
dc.contributor.funder Seventh Framework Programme en
dc.contributor.funder Horizon 2020 en
dc.contributor.funder GenProbio srl, Italy
dc.description.status Peer reviewed en
dc.identifier.journaltitle Systematic and Applied Microbiology en
dc.internal.copyrightchecked No !!CORA!! en
dc.internal.licenseacceptance Yes en
dc.internal.placepublication Access to this article is restricted until 12 months after publication by request of the publisher. en
dc.internal.IRISemailaddress d.vansinderen@ucc.ie en
dc.internal.bibliocheck In Press Feb 2018. Update Citation, start page end page etc. Add volume, issue. sb
dc.relation.project info:eu-repo/grantAgreement/EC/FP7::SP1::KBBE/277673/EU/A Healthy Diet for a Healthy Life - Coordination Action/HDHL CSA en
dc.relation.project info:eu-repo/grantAgreement/EC/H2020::CSA/696300/EU/The second coordination and support action for the JPI Healthy Diet for a Healthy Life/CSA JPI HDHL 2.0 en
dc.relation.project info:eu-repo/grantAgreement/SFI/SFI Research Centres/12/RC/2273/IE/Alimentary Pharmabiotic Centre (APC) - Interfacing Food & Medicine/ en


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© 2017 Elsevier Ltd. All rights reserved. This manuscript version is made available under the CC BY-NC-ND 4.0 license. Except where otherwise noted, this item's license is described as © 2017 Elsevier Ltd. All rights reserved. This manuscript version is made available under the CC BY-NC-ND 4.0 license.
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