Darned in 2013: inclusion of model organisms and linking with Wikipedia
dc.contributor.author | Kiran, Anmol M. | |
dc.contributor.author | O'Mahony, John J. | |
dc.contributor.author | Sanjeev, Komal | |
dc.contributor.author | Baranov, Pavel V. | |
dc.contributor.funder | Wellcome Trust | |
dc.contributor.funder | Science Foundation Ireland | |
dc.date.accessioned | 2017-11-14T13:24:30Z | |
dc.date.available | 2017-11-14T13:24:30Z | |
dc.date.issued | 2013 | |
dc.description.abstract | DARNED (DAtabase of RNA EDiting, available at http://darned.ucc.ie) is a centralized repository of reference genome coordinates corresponding to RNA nucleotides having altered templated identities in the process of RNA editing. The data in DARNED are derived from published datasets of RNA editing events. RNA editing instances have been identified with various methods, such as bioinformatics screenings, deep sequencing and/or biochemical techniques. Here we report our current progress in the development and expansion of the DARNED. In addition to novel database features the DARNED update describes inclusion of Drosophila melanogaster and Mus musculus RNA editing events and the launch of a community-based annotation in the RNA WikiProject. | en |
dc.description.sponsorship | Science Foundation Ireland (06/IN.1/B81); Wellcome Trust (094423) | en |
dc.description.status | Peer reviewed | en |
dc.description.version | Published Version | en |
dc.format.mimetype | application/pdf | en |
dc.identifier.citation | Kiran, A. M., O'Mahony, J. J., Sanjeev, K. and Baranov, P. V. (2013) 'Darned in 2013: inclusion of model organisms and linking with Wikipedia', Nucleic Acids Research, 41(D1), pp. 258-261. doi: 10.1093/nar/gks961 | en |
dc.identifier.doi | 10.1093/nar/gks961 | |
dc.identifier.endpage | 261 | |
dc.identifier.issn | 0305-1048 | |
dc.identifier.issued | D1 | |
dc.identifier.journaltitle | Nucleic Acids Research | en |
dc.identifier.startpage | 258 | |
dc.identifier.uri | https://hdl.handle.net/10468/5021 | |
dc.identifier.volume | 41 | |
dc.language.iso | en | en |
dc.publisher | Oxford University Press | en |
dc.relation.project | info:eu-repo/grantAgreement/SFI/SFI Principal Investigator Programme (PI)/06/IN.1/B81/IE/RNA editing in humans: Identification prediction and therapeutic application/ | |
dc.relation.uri | https://academic.oup.com/nar/article/41/D1/D258/1074741/Darned-in-2013-inclusion-of-model-organisms-and | |
dc.rights | © 2012, the Authors. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. | en |
dc.rights.uri | https://creativecommons.org/licenses/by-nc/3.0/ | |
dc.subject | DNA-sequence differences | en |
dc.subject | RNA editing sites | en |
dc.subject | To-inosine RNA | en |
dc.subject | Human transcriptome | en |
dc.subject | Widespread RNA | en |
dc.subject | Accurate identification | en |
dc.subject | ADAR deaminases | en |
dc.subject | Messenger RNA | en |
dc.subject | Parallel DNA | en |
dc.subject | Database | en |
dc.title | Darned in 2013: inclusion of model organisms and linking with Wikipedia | en |
dc.type | Article (peer-reviewed) | en |
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