Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov

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dc.contributor.authorLugli, Gabriele A.
dc.contributor.authorMangifesta, Marta
dc.contributor.authorDuranti, Sabrina
dc.contributor.authorAnzalone, Rosaria
dc.contributor.authorMilani, Christian
dc.contributor.authorMancabelli, Leonardo
dc.contributor.authorAlessandri, Giulia
dc.contributor.authorTurroni, Francesca
dc.contributor.authorOssiprandi, Maria Cristina
dc.contributor.authorvan Sinderen, Douwe
dc.contributor.authorVentura, Marco
dc.contributor.funderScience Foundation Irelanden
dc.contributor.funderSeventh Framework Programmeen
dc.contributor.funderHorizon 2020en
dc.contributor.funderGenProbio srl, Italy
dc.date.accessioned2018-02-09T15:24:13Z
dc.date.available2018-02-09T15:24:13Z
dc.date.issued2018
dc.date.updated2018-02-09T14:36:27Z
dc.description.abstractSix Bifidobacterium strains, i.e., Goo31D, Ham19E, Rab10A, Tam1G, Uis4E and Uis1B, were isolated from domestic goose (Anser domesticus), European hamster (Cricetus cricetus), European rabbit (Oryctolagus cuniculus), emperor tamarin (Saguinus imperator) and pygmy marmoset (Callithrix pygmaea), respectively. Cells are Gram-positive, non-motile, non-sporulating, facultative anaerobic and fructose 6-phosphate phosphoketolase-positive. Phylogenetic analyses based on 16S rRNA and ITS sequences, multilocus sequences (including hsp60, rpoB, dnaJ, dnaG and clpC genes) and the core genome revealed that bifidobacterial strains Goo31D, Ham19E, Rab10A, Tam1G, Uis4E and Uis1B exhibit close phylogenetic relatedness to Bifidobacterium choerinum LMG 10510, Bifidobacterium hapali DSM 100202, Bifidobacterium saguini DSM 23967 and Bifidobacterium stellenboschense DSM 23968. Further genotyping based on the genome sequence of the isolated strains combined with phenotypic analyses, clearly show that these strains are distinct from each of the type strains of the so far recognized Bifidobacterium species. Thus, Bifidobacterium anseris sp. nov. (Goo31D = LMG 30189T = CCUG 70960T), Bifidobacterium criceti sp. nov. (Ham19E = LMG 30188T = CCUG 70962T), Bifidobacterium imperatoris sp. nov. (Tam1G = LMG 30297T = CCUG 70961T), Bifidobacterium italicum sp. nov. (Rab10A = LMG 30187T = CCUG 70963T), Bifidobacterium margollesii sp. nov. (Uis1B = LMG 30296T = CCUG 70959T) and Bifidobacterium parmae sp. nov. (Uis4E = LMG 30295T = CCUG 70964T) are proposed as novel Bifidobacterium species.en
dc.description.sponsorshipGenProbio srl, Italy (financial support of the Laboratory of Probiogenomics)en
dc.description.statusPeer revieweden
dc.description.versionAccepted Versionen
dc.format.mimetypeapplication/pdfen
dc.identifier.citationLugli, G. A., Mangifesta, M., Duranti, S., Anzalone, R., Milani, C., Mancabelli, L., Alessandri, G., Turroni, F., Ossiprandi, M. C., v Sinderen, D. and Ventura, M. 'Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov', Systematic and Applied Microbiology, 41(3), pp.173-183, doi: 10.1016/j.syapm.2018.01.002en
dc.identifier.doi10.1016/j.syapm.2018.01.002
dc.identifier.endpage31en
dc.identifier.endpage183
dc.identifier.issn0723-2020
dc.identifier.issued3
dc.identifier.journaltitleSystematic and Applied Microbiologyen
dc.identifier.startpage1en
dc.identifier.startpage173
dc.identifier.urihttps://hdl.handle.net/10468/5436
dc.identifier.volume41
dc.language.isoenen
dc.publisherElsevieren
dc.relation.projectinfo:eu-repo/grantAgreement/EC/FP7::SP1::KBBE/277673/EU/A Healthy Diet for a Healthy Life - Coordination Action/HDHL CSAen
dc.relation.projectinfo:eu-repo/grantAgreement/EC/H2020::CSA/696300/EU/The second coordination and support action for the JPI Healthy Diet for a Healthy Life/CSA JPI HDHL 2.0en
dc.relation.projectinfo:eu-repo/grantAgreement/SFI/SFI Research Centres/12/RC/2273/IE/Alimentary Pharmabiotic Centre (APC) - Interfacing Food & Medicine/en
dc.relation.urihttps://www.sciencedirect.com/science/article/pii/S0723202018300171
dc.rights© 2017 Elsevier Ltd. All rights reserved. This manuscript version is made available under the CC BY-NC-ND 4.0 license.en
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/en
dc.subjectPhylogeneticen
dc.subjectNext generation sequencingen
dc.subjectGenomicsen
dc.subjectMetagenomicsen
dc.subjectBifidobacteriaen
dc.subjectBifidobacteriumen
dc.titlePhylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. noven
dc.typeArticle (peer-reviewed)en
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