Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea

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dc.contributor.authorRungsirivanich, Patthanasak
dc.contributor.authorParlindungan, Elvina
dc.contributor.authorMahony, Jennifer
dc.contributor.authorSupandee, Witsanu
dc.contributor.authorThongwai, Narumol
dc.contributor.authorvan Sinderen, Douwe
dc.contributor.funderNational Research Council of Thailand, PHD60I0089
dc.contributor.funderChiang Mai University
dc.contributor.funderResearch Ireland, SFI, SFI/12/RC/2273a; SFI/12/RC/2273b
dc.date.accessioned2026-10-22T12:41:01Z
dc.date.available2026-10-22T12:41:01Z
dc.date.issued2025-01-23
dc.description.abstractFloricoccus penangensis ML061-4 was originally isolated from the leaf surface of an Assam tea plant (Camellia sinensis var. assamica) from Northern Thailand. To assess the functions encoded by the F. penangensis ML061-4 genome, gene identification and annotation were undertaken by in silico analysis. The complete genome of F. penangensis ML061-4 consists of single chromosome of 2,159,127 base pairs, containing a GC content of 33.2% and encompassing 2049 predicted protein-encoding genes. A total of 1195 genes (58.0%) in the F. penangensis ML061-4 genome have assignable functions based on BlastKOALA analysis. Furthermore, 1235 genes (59.9%) were classified into six KEGG functional categories with 187 associated pathways, while 1419 genes (68.8%) were assigned a putative function by the Clusters of Orthologous Groups (COGs) database. The ML061-4 genome was evaluated for genes associated with complex carbohydrate metabolism, bacterial adhesion, virulence factors, pathogenicity, bacteriophages, antiviral defence systems as well as toxin- and antibiotic-resistance associated genes, and genes involved in toxin production, secondary metabolite biosynthesis and xenobiotics biodegradation. The obtained results support the notion of F. penangensis ML061-4 being safe for biotechnological and food industry purposes. This is the first report outlining functional genomic insights regarding a member of the genus Floricoccus.en
dc.description.sponsorshipNational Research Council of Thailand|PHD60I0089
dc.description.sponsorshipScience Foundation Ireland|SFI/12/RC/2273
dc.description.sponsorshipScience Foundation Ireland|SFI/12/RC/2273b
dc.description.versionPublished Version
dc.format.extent14
dc.format.mimetypeapplication/pdfen
dc.identifier.articleid2951
dc.identifier.authororcidRungsirivanich, Patthanasak
dc.identifier.authororcidParlindungan, Elvina
dc.identifier.authororcidMahony, Jennifer§0000-0001-5846-6303
dc.identifier.authororcidSupandee, Witsanu
dc.identifier.authororcidThongwai, Narumol
dc.identifier.authororcidvan Sinderen, Douwe§0000-0003-1823-7957
dc.identifier.citationRungsirivanich, P, Parlindungan, E, Mahony, J, Supandee, W, Thongwai, N & van Sinderen, D 2025, 'Functional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam tea', Scientific Reports, vol. 15, 2951, pp. 1-14. https://doi.org/10.1038/s41598-025-86602-x
dc.identifier.doi10.1038/s41598-025-86602-x
dc.identifier.endpage14
dc.identifier.issn2045-2322
dc.identifier.journaltitleScientific Reports
dc.identifier.otherORCID: /0000-0003-1823-7957/work/217137074
dc.identifier.startpage1
dc.identifier.urihttps://hdl.handle.net/10468/19496
dc.identifier.volume15
dc.language.isoen
dc.publisherNature Research
dc.relation.urihttps://www.scopus.com/pages/publications/85216717775
dc.rights© 2025, the Author(s). This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made.
dc.rights.accessrightsopen access
dc.rights.licensenameAttribution 4.0 International
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.statusPeer reviewed
dc.subjectFloricoccus penangensis ML061-4
dc.subjectAssam tea
dc.subject[Microbiology]
dc.titleFunctional genomic insights into Floricoccus penangensis ML061-4 isolated from leaf surface of Assam teaen
dc.typeArticle (peer-reviewed)
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